2019

Development of an artificial intelligence model to predict survival at specific time intervals for lung cancer patients

In: ASCO 2019 Annual Meeting, Poster Presentation

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Using Artificial Intelligence to Improve Capture of Metastatic Breast Cancer Status in Electronic Health Records

In: ISPOR 2019, Poster Presentation

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Topological scoring of protein interaction networks

2018

The shape of biomedical data

Towards a new approach to reveal dynamical organization of the brain using topological data analysis

Airway pathological heterogeneity in asthma: Visualization of disease microclusters using topological data analysis

Particles in exhaled air (PExA): non-invasive phenotyping of small airways disease in adult asthma

Stereotypic Immune System Development in Newborn Children

Large-Scale Label-Free Quantitative Mapping of the Sputum Proteome

Pharmacogenomic landscape of patient-derived tumor cells informs precision oncology therapy

Insights into myalgic encephalomyelitis/chronic fatigue syndrome phenotypes through comprehensive metabolomics

2017

MRI and Biomechanics Multidimensional Data Analysis Reveals R2-R1q as an Early Predictor of Cartilage Lesion Progression in Knee Osteoarthritis

Uncovering precision phenotype-biomarker associations in traumatic brain injury using topological data analysis

Longitudinal identification of clinically distinct neurophenotypes in young children with fragile X syndrome

Mass Cytometry and Topological Data Analysis Reveal Immune Parameters Associated with Complications after Allogeneic Stem Cell Transplantation

Microbial Signatures Associated with Oropharyngeal and Oral Squamous Cell Carcinomas

The ovarian cancer oncobiome

MACHINE LEARNING ALGORITHM FOR AUTOMATIC DETECTION OF CT-IDENTIFIABLE HYPERDENSE LESIONS ASSOCIATED WITH TRAUMATIC BRAIN INJURY

A Severe Asthma Disease Signature from Gene Expression Profiling of Peripheral Blood from U-BIOPRED Cohorts

Single-cell topological rNA-seq analysis reveals insights into cellular differentiation and development

Spatiotemporal genomic architecture informs precision oncology in glioblastoma

Topological methods for genomics: Present and future directions

Fecal metagenomic profiles in subgroups of patients with myalgic encephalomyelitis/chronic fatigue syndrome

2016

Topological data analysis: A promising big data exploration tool in biology, analytical chemistry and physical chemistry

Multidimensional endotyping in patients with severe asthma reveals inflammatory heterogeneity in matrix metalloproteinases and chitinase 3–like protein 1

Tracking Resilience to Infections by Mapping Disease Space

How Many Parameters Does It Take to Describe Disease Tolerance?

Disease Model of GATA4 Mutation Reveals Transcription Factor Cooperativity in Human Cardiogenesis

Topological Data Analysis Generates HighResolution, Genome-wide Maps of Human Recombination

2015

Innate and adaptive T cells in asthmatic patients: Relationship to severity and disease mechanisms

2011

Topology based data analysis identifies a subgroup of breast cancers with a unique mutational profile and excellent survival

2005

Topological Methods Reveal High and Low Functioning Neuro-Phenotypes Within Fragile X Syndrome

Other

Using Topological Data Analysis to find discrimination between microbial states in human microbiome data

A Novel Approach to Identifying a Neuroimaging Biomarker for Patients With Serious Mental Illness

Identification of type 2 diabetes subgroups through topological analysis of patient similarity

Characterizing Scales of Genetic Recombination and Antibiotic Resistance in Pathogenic Bacteria Using Topological Data Analysis

A Multimodal Data Analysis Approach for Targeted Drug Discovery Involving Topological Data Analysis (TDA)